-
Ui et al., 1994, In Vitro Cell. Dev. Biol. Anim. 30(4): 209--216
Newly established cell lines from Drosophila larval CNS express neural specific characteristics.
-
Ui-Tei and Miyata, 2000, D. I. S. 83: 188--189
Cell lines derived from Drosophila larval central nervous system and their practical applications.
-
Misulovin et al., 2008, Chromosoma 117(1): 89--102
Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.
-
Cherbas, 2008.10.15, Unpublished cell lines from the Miyake lab.
Unpublished cell lines from the Miyake lab.
-
Yoshida et al., 2008, Glycobiology 18(12): 1094--1104
Identification of the Drosophila core 1 beta1,3-galactosyltransferase gene that synthesizes T antigen in the embryonic central nervous system and hemocytes.
-
Cherbas, 2008.11.12, Cell lines from the DGRC.
Cell lines from the DGRC.
-
Schaaf et al., 2009, PLoS ONE 4(7): e6202
Regulation of the Drosophila Enhancer of split and invected-engrailed gene complexes by sister chromatid cohesion proteins.
-
Liu et al., 2009, Genome Biol. 10(3): R26
Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology.
-
Sims et al., 2009, Genome Biol. 10(2): R20
PDGF/VEGF signaling controls cell size in Drosophila.
-
Schwartz et al., 2010, PLoS Genet. 6(1): e1000805
Alternative epigenetic chromatin states of polycomb target genes.
-
Southon et al., 2010, Biometals 23(4): 681--694
Conservation of copper-transporting P(IB)-type ATPase function.
-
Qin et al., 2010, PLoS ONE 5(5): e10611
Systematic comparison of constitutive promoters and the doxycycline-inducible promoter.
-
Rhodes et al., 2010, Dev. Biol. 344(2): 637--649
Positive regulation of c-Myc by cohesin is direct, and evolutionarily conserved.
-
modENCODE Consortium et al., 2010, Science 330(6012): 1787--1797
Identification of functional elements and regulatory circuits by Drosophila modENCODE.
-
Cherbas et al., 2011, Genome Res. 21(2): 301--314
The transcriptional diversity of 25 Drosophila cell lines.
-
Riddle et al., 2011, Genome Res. 21(2): 147--163
Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin.
-
Eaton et al., 2011, Genome Res. 21(2): 164--174
Chromatin signatures of the Drosophila replication program.
-
Vatolina et al., 2011, PLoS ONE 6(10): e25960
Identical Functional Organization of Nonpolytene and Polytene Chromosomes in Drosophila melanogaster.
-
Fay et al., 2011, Curr. Biol. 21(19): 1624--1634
Cohesin selectively binds and regulates genes with paused RNA polymerase.
-
Park et al., 2011, Curr. Biol. 21(18): 1515--1524
Molecular organization of Drosophila neuroendocrine cells by dimmed.
-
Cardoso-Moreira et al., 2011, PLoS Genet. 7(11): e1002340
Drosophila duplication hotspots are associated with late-replicating regions of the genome.
-
Kharchenko et al., 2011, Nature 471(7339): 480--485
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.
-
Alekseyenko et al., 2012, PLoS Genet. 8(4): e1002646
Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.
-
Riddle et al., 2012, PLoS Genet. 8(9): e1002954
Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain.
-
Matzat et al., 2012, PLoS Genet. 8(11): e1003069
Tissue-specific regulation of chromatin insulator function.
-
Gutiérrez et al., 2012, Development 139(1): 117--127
The role of the histone H2A ubiquitinase Sce in Polycomb repression.
-
Schwartz et al., 2012, Genome Res. 22(11): 2188--2198
Nature and function of insulator protein binding sites in the Drosophila genome.
-
Ji et al., 2012, G3 (Bethesda) 2(12): 1651--1660
In Vivo Regulation of E2F1 by Polycomb Group Genes in Drosophila.
-
Sher et al., 2012, Genome Res. 22(1): 64--75
Developmental control of gene copy number by repression of replication initiation and fork progression.
-
Marbach et al., 2012, Genome Res. 22(7): 1334--1349
Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
-
Schaaf et al., 2013, PLoS Genet. 9(3): e1003382
Genome-wide control of RNA polymerase II activity by cohesin.
-
Schaaf et al., 2013, G3 (Bethesda) 3(10): 1785--1794
The Drosophila Enhancer of split Gene Complex: Architecture and Coordinate Regulation by Notch, Cohesin, and Polycomb Group Proteins.
-
Schaaf et al., 2013, PLoS Genet. 9(6): e1003560
Cohesin and polycomb proteins functionally interact to control transcription at silenced and active genes.
-
Li et al., 2013, PLoS Genet. 9(4): e1003436
Insulators Target Active Genes to Transcription Factories and Polycomb-Repressed Genes to Polycomb Bodies.
-
Li et al., 2013, Mol. Cell 50(5): 711--722
Kinetic Competition between Elongation Rate and Binding of NELF Controls Promoter-Proximal Pausing.
-
Goh et al., 2013, Dev. Biol. 381(2): 353--364
Clueless regulates aPKC activity and promotes self-renewal cell fate in Drosophila lgl mutant larval brains.
-
Lee et al., 2014, Genome Biol. 15(8): R70
DNA copy number evolution in Drosophila cell lines.
-
Wen et al., 2014, Genome Res. 24(7): 1236--1250
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines.
-
Lubelsky et al., 2014, Genome Res. 24(7): 1102--1114
DNA replication and transcription programs respond to the same chromatin cues.
-
Ho et al., 2014, Nature 512(7515): 449--452
Comparative analysis of metazoan chromatin organization.
-
Kahn et al., 2014, PLoS Genet. 10(7): e1004495
Combinatorial Interactions Are Required for the Efficient Recruitment of Pho Repressive Complex (PhoRC) to Polycomb Response Elements.
-
Orsi et al., 2014, Genome Res. 24(5): 809--820
High-resolution mapping defines the cooperative architecture of Polycomb response elements.
-
Zhimulev et al., 2014, PLoS ONE 9(7): e101631
Genetic Organization of Interphase Chromosome Bands and Interbands in Drosophila melanogaster.
-
Park et al., 2014, J. Neurosci. 34(39): 13195--13207
Peptidergic Cell-Specific Synaptotagmins in Drosophila: Localization to Dense-Core Granules and Regulation by the bHLH Protein DIMMED.
-
Luhur et al., 2014, Proc. Natl. Acad. Sci. U.S.A. 111(4): 1421--1426
Drosha-independent DGCR8/Pasha pathway regulates neuronal morphogenesis.
-
Yáñez-Cuna et al., 2014, Genome Res. 24(7): 1147--1156
Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.
-
Dale et al., 2014, Nucleic Acids Res. 42(14): 9158--9170
metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.
-
Font-Burgada et al., 2014, Nucleic Acids Res. 42(4): 2126--2137
chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome.
-
Vogelmann et al., 2014, PLoS Genet. 10(8): e1004544
Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.
-
Zhou and Troyanskaya, 2014, PLoS Comput. Biol. 10(3): e1003525
Global quantitative modeling of chromatin factor interactions.
-
Seridi et al., 2014, PLoS ONE 9(10): e109326
Dynamic Epigenetic Control of Highly Conserved Noncoding Elements.
-
Chawla and Sokol, 2014, Nucleic Acids Res. 42(8): 5245--5255
ADAR mediates differential expression of polycistronic microRNAs.
-
Maksimenko et al., 2014, Epigenetics 9(9): 1261--1270
Highly conserved ENY2/Sus1 protein binds to Drosophila CTCF and is required for barrier activity.
-
Westholm et al., 2014, Cell Rep. 9(5): 1966--1980
Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation.
-
Webster et al., 2015, PLoS Biol. 13(7): e1002210
The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster.
-
Duff et al., 2015, Nature 521(7552): 376--379
Genome-wide identification of zero nucleotide recursive splicing in Drosophila.
-
Hadžić et al., 2015, Nucleic Acids Res. 43(4): 2199--2215
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED.
-
Stampfel et al., 2015, Nature 528(7580): 147--151
Transcriptional regulators form diverse groups with context-dependent regulatory functions.
-
Pérez-Lluch et al., 2015, Nat Genet. 47(10):1158-67.
-
Comoglio et al., 2015, Cell Rep. 11(5): 821--834
High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins.
-
Stoiber et al., 2016, G3 (Bethesda):
Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines.
-
Ulianov et al., 2016, Genome Res. 26(1): 70--84
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
-
Swain et al., 2016, PLoS Genet. 12(9): e1006331
Drosophila TDP-43 RNA-Binding Protein Facilitates Association of Sister Chromatid Cohesion Proteins with Genes, Enhancers and Polycomb Response Elements.
-
Adrian et al., 2016, Genome Biol. Evol. 8(8): 2597--2612
Predictive Models of Recombination Rate Variation across the Drosophila melanogaster Genome.
-
Huisinga et al., 2016, Genetics 202(2): 565--582
Targeting of P-Element Reporters to Heterochromatic Domains by Transposable Element 1360 in Drosophila melanogaster.
-
Rabinovich et al., 2016, Cell 164(1-2): 170--182
Nitric Oxide as a Switching Mechanism between Axon Degeneration and Regrowth during Developmental Remodeling.
-
Bairoch, 2016, The Cellosaurus: a cell line knowledge resource.
The Cellosaurus: a cell line knowledge resource.
-
Georgiev, 2016.4.25, Comments on S2 cell line used.
Comments on S2 cell line used.
-
Thul et al., 2017, J. Cell Sci. 130(18): 3141--3157
Targeting of the Drosophila protein CG2254/Ldsdh1 to a subset of lipid droplets.
-
Misulovin et al., 2018, PLoS Genet. 14(2): e1007225
Brca2, Pds5 and Wapl differentially control cohesin chromosome association and function.
-
Chen et al., 2018, Development 145(1): dev154047
Shep regulates Drosophila neuronal remodeling by controlling transcription of its chromatin targets.
-
Yao et al., 2018, Mol. Cell 71(5): 848--857.e6
Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons.
-
Baldi et al., 2018, Mol. Cell 72(4): 661--672.e4
Genome-wide Rules of Nucleosome Phasing in Drosophila.
-
Baldi et al., 2018, Nat. Struct. Mol. Biol. 25(9): 894--901
Genome-wide measurement of local nucleosome array regularity and spacing by nanopore sequencing.
-
Cusumano et al., 2018, PLoS Genet. 14(7): e1007500
Modulation of miR-210 alters phasing of circadian locomotor activity and impairs projections of PDF clock neurons in Drosophila melanogaster.
-
Zhou et al., 2018, eLife 7: e38389
Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development.
-
Cloud et al., 2019, eLife 8: e49677
Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization.
-
Matsuo et al., 2019, J. Lipid Res. 60(7): 1199--1211
Different mechanisms for selective transport of fatty acids using a single class of lipoprotein in Drosophila.
-
Pherson et al., 2019, Genome Res. 29(4): 602--612
Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila.
-
Luzhin et al., 2019, J. Cell. Biochem. 120(3): 4494--4503
Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
-
Luhur et al., 2019, J. Vis. Exp.: e59459
Thawing, Culturing, and Cryopreserving Drosophila Cell Lines.
-
Yoong et al., 2020, Neuron 106(3): 452--467.e8
Atypical Myosin Tunes Dendrite Arbor Subdivision.
-
Behrens et al., 2021, Mol. Cell 81(8): 1802--1815.e7
High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq.
-
Bawankar et al., 2021, Nat. Commun. 12(1): 3778
Hakai is required for stabilization of core components of the m6A mRNA methylation machinery.
-
Worpenberg et al., 2021, EMBO J. 40(4): e104975
Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila.
-
Dib et al., 2021, Front. Genet. 12: 714152
Pri smORF Peptides Are Wide Mediators of Ecdysone Signaling, Contributing to Shape Spatiotemporal Responses.
-
Han et al., 2021, Genetics 219(2): iyab113
Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture.
-
Mariyappa et al., 2021, G3 (Bethesda) 11(8): jkab161
Generation of Drosophila attP containing cell lines using CRISPR-Cas9.
-
Chen et al., 2021, Nat. Commun. 12(1): 6366
Temporal inhibition of chromatin looping and enhancer accessibility during neuronal remodeling.
-
Shiomi et al., 2021, Cell Rep. 35(10): 109219
Extreme deformability of insect cell membranes is governed by phospholipid scrambling.
-
Chathoth et al., 2022, Genome Res. 32(4): 682--698
-
Bar-Cohen et al., 2023, Development 150(11): dev201041