• Sort By:   Author  |  Year


  • Flybase
    Pubmed
    DOI
    Ui et al., 1994, In Vitro Cell. Dev. Biol. Anim. 30(4): 209--216
    Newly established cell lines from Drosophila larval CNS express neural specific characteristics.
    • Keywords:
    • neurotransmitters
  • Flybase
    Ui-Tei and Miyata, 2000, D. I. S. 83: 188--189
    Cell lines derived from Drosophila larval central nervous system and their practical applications.
  • Flybase
    Pubmed
    DOI
    Misulovin et al., 2008, Chromosoma 117(1): 89--102
    Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.
    • Keywords:
    • cohesin complex
  • Flybase
    Cherbas, 2008.10.15, Unpublished cell lines from the Miyake lab.
    Unpublished cell lines from the Miyake lab.
    • Keywords:
    • establishment of cell lines
  • Flybase
    Pubmed
    DOI
    Yoshida et al., 2008, Glycobiology 18(12): 1094--1104
    Identification of the Drosophila core 1 beta1,3-galactosyltransferase gene that synthesizes T antigen in the embryonic central nervous system and hemocytes.
  • Flybase
    Cherbas, 2008.11.12, Cell lines from the DGRC.
    Cell lines from the DGRC.
  • Flybase
    Pubmed
    DOI
    Schaaf et al., 2009, PLoS ONE 4(7): e6202
    Regulation of the Drosophila Enhancer of split and invected-engrailed gene complexes by sister chromatid cohesion proteins.
    • Keywords:
    • cohesin complex
  • Flybase
    Pubmed
    DOI
    Liu et al., 2009, Genome Biol. 10(3): R26
    Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology.
    • Keywords:
    • cytoskeleton
    • morphology
    • RNAi
  • Flybase
    Pubmed
    DOI
    Sims et al., 2009, Genome Biol. 10(2): R20
    PDGF/VEGF signaling controls cell size in Drosophila.
    • Keywords:
    • PDGF/VEGF signalling
    • Pvr signalling
    • RNAi
  • Flybase
    Pubmed
    DOI
    Schwartz et al., 2010, PLoS Genet. 6(1): e1000805
    Alternative epigenetic chromatin states of polycomb target genes.
    • Keywords:
    • chromatin
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Southon et al., 2010, Biometals 23(4): 681--694
    Conservation of copper-transporting P(IB)-type ATPase function.
    • Keywords:
    • copper transport
  • Flybase
    Pubmed
    DOI
    Qin et al., 2010, PLoS ONE 5(5): e10611
    Systematic comparison of constitutive promoters and the doxycycline-inducible promoter.
    • Keywords:
    • promoters
    • transfection
  • Flybase
    Pubmed
    DOI
    Rhodes et al., 2010, Dev. Biol. 344(2): 637--649
    Positive regulation of c-Myc by cohesin is direct, and evolutionarily conserved.
    • Keywords:
    • cohesin complex
  • Flybase
    Pubmed
    DOI
    modENCODE Consortium et al., 2010, Science 330(6012): 1787--1797
    Identification of functional elements and regulatory circuits by Drosophila modENCODE.
    • Keywords:
    • chromatin
    • transcriptome
  • Flybase
    Pubmed
    DOI
    Cherbas et al., 2011, Genome Res. 21(2): 301--314
    The transcriptional diversity of 25 Drosophila cell lines.
    • Keywords:
    • transcriptome
  • Flybase
    Pubmed
    DOI
    Riddle et al., 2011, Genome Res. 21(2): 147--163
    Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin.
    • Keywords:
    • chromatin
    • heterochromatin
    • histones
  • Flybase
    Pubmed
    DOI
    Eaton et al., 2011, Genome Res. 21(2): 164--174
    Chromatin signatures of the Drosophila replication program.
    • Keywords:
    • replication
  • Flybase
    Pubmed
    DOI
    Vatolina et al., 2011, PLoS ONE 6(10): e25960
    Identical Functional Organization of Nonpolytene and Polytene Chromosomes in Drosophila melanogaster.
    • Keywords:
    • bands and interbands
    • chromatin
  • Flybase
    Pubmed
    DOI
    Fay et al., 2011, Curr. Biol. 21(19): 1624--1634
    Cohesin selectively binds and regulates genes with paused RNA polymerase.
    • Keywords:
    • cohesin complex
  • Flybase
    Pubmed
    DOI
    Park et al., 2011, Curr. Biol. 21(18): 1515--1524
    Molecular organization of Drosophila neuroendocrine cells by dimmed.
    • Keywords:
    • neurosecretion
  • Flybase
    Pubmed
    DOI
    Cardoso-Moreira et al., 2011, PLoS Genet. 7(11): e1002340
    Drosophila duplication hotspots are associated with late-replicating regions of the genome.
    • Keywords:
    • duplications
    • replication
  • Flybase
    Pubmed
    DOI
    Kharchenko et al., 2011, Nature 471(7339): 480--485
    Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.
    • Keywords:
    • chromatin
  • Flybase
    Pubmed
    DOI
    Alekseyenko et al., 2012, PLoS Genet. 8(4): e1002646
    Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.
    • Keywords:
    • chromatin
    • dosage compensation
  • Flybase
    Pubmed
    DOI
    Riddle et al., 2012, PLoS Genet. 8(9): e1002954
    Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain.
    • Keywords:
    • chromatin
    • chromosome 4
    • heterochromatin
  • Flybase
    Pubmed
    DOI
    Matzat et al., 2012, PLoS Genet. 8(11): e1003069
    Tissue-specific regulation of chromatin insulator function.
    • Keywords:
    • insulators
  • Flybase
    Pubmed
    DOI
    Gutiérrez et al., 2012, Development 139(1): 117--127
    The role of the histone H2A ubiquitinase Sce in Polycomb repression.
    • Keywords:
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Schwartz et al., 2012, Genome Res. 22(11): 2188--2198
    Nature and function of insulator protein binding sites in the Drosophila genome.
    • Keywords:
    • insulators
  • Flybase
    Pubmed
    DOI
    Ji et al., 2012, G3 (Bethesda) 2(12): 1651--1660
    In Vivo Regulation of E2F1 by Polycomb Group Genes in Drosophila.
  • Flybase
    Pubmed
    DOI
    Sher et al., 2012, Genome Res. 22(1): 64--75
    Developmental control of gene copy number by repression of replication initiation and fork progression.
    • Keywords:
    • replication
  • Flybase
    Pubmed
    DOI
    Marbach et al., 2012, Genome Res. 22(7): 1334--1349
    Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
    • Keywords:
    • transcription regulation
  • Flybase
    Pubmed
    DOI
    Schaaf et al., 2013, PLoS Genet. 9(3): e1003382
    Genome-wide control of RNA polymerase II activity by cohesin.
    • Keywords:
    • cohesin complex
  • Flybase
    Pubmed
    DOI
    Schaaf et al., 2013, G3 (Bethesda) 3(10): 1785--1794
    The Drosophila Enhancer of split Gene Complex: Architecture and Coordinate Regulation by Notch, Cohesin, and Polycomb Group Proteins.
    • Keywords:
    • cohesin complex
    • Notch signalling
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Schaaf et al., 2013, PLoS Genet. 9(6): e1003560
    Cohesin and polycomb proteins functionally interact to control transcription at silenced and active genes.
    • Keywords:
    • cohesin complex
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Li et al., 2013, PLoS Genet. 9(4): e1003436
    Insulators Target Active Genes to Transcription Factories and Polycomb-Repressed Genes to Polycomb Bodies.
    • Keywords:
    • insulators
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Li et al., 2013, Mol. Cell 50(5): 711--722
    Kinetic Competition between Elongation Rate and Binding of NELF Controls Promoter-Proximal Pausing.
    • Keywords:
    • pol II
    • promoters
  • Flybase
    Pubmed
    DOI
    Goh et al., 2013, Dev. Biol. 381(2): 353--364
    Clueless regulates aPKC activity and promotes self-renewal cell fate in Drosophila lgl mutant larval brains.
  • Flybase
    Pubmed
    DOI
    Lee et al., 2014, Genome Biol. 15(8): R70
    DNA copy number evolution in Drosophila cell lines.
    • Keywords:
    • copy number variation
  • Flybase
    Pubmed
    DOI
    Wen et al., 2014, Genome Res. 24(7): 1236--1250
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines.
    • Keywords:
    • sRNAs
    • transcriptome
  • Flybase
    Pubmed
    DOI
    Lubelsky et al., 2014, Genome Res. 24(7): 1102--1114
    DNA replication and transcription programs respond to the same chromatin cues.
    • Keywords:
    • chromatin
    • replication
  • Flybase
    Pubmed
    DOI
    Ho et al., 2014, Nature 512(7515): 449--452
    Comparative analysis of metazoan chromatin organization.
    • Keywords:
    • chromatin
  • Flybase
    Pubmed
    DOI
    Kahn et al., 2014, PLoS Genet. 10(7): e1004495
    Combinatorial Interactions Are Required for the Efficient Recruitment of Pho Repressive Complex (PhoRC) to Polycomb Response Elements.
    • Keywords:
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Orsi et al., 2014, Genome Res. 24(5): 809--820
    High-resolution mapping defines the cooperative architecture of Polycomb response elements.
    • Keywords:
    • chromatin
    • Polycomb
  • Flybase
    Pubmed
    DOI
    Zhimulev et al., 2014, PLoS ONE 9(7): e101631
    Genetic Organization of Interphase Chromosome Bands and Interbands in Drosophila melanogaster.
    • Keywords:
    • bands and interbands
    • chromatin
  • Flybase
    Pubmed
    DOI
    Park et al., 2014, J. Neurosci. 34(39): 13195--13207
    Peptidergic Cell-Specific Synaptotagmins in Drosophila: Localization to Dense-Core Granules and Regulation by the bHLH Protein DIMMED.
    • Keywords:
    • neurosecretion
    • subcellular localization
  • Flybase
    Pubmed
    DOI
    Luhur et al., 2014, Proc. Natl. Acad. Sci. U.S.A. 111(4): 1421--1426
    Drosha-independent DGCR8/Pasha pathway regulates neuronal morphogenesis.
    • Keywords:
    • RNA processing
  • Flybase
    Pubmed
    DOI
    Yáñez-Cuna et al., 2014, Genome Res. 24(7): 1147--1156
    Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.
    • Keywords:
    • enhancers
  • Flybase
    Pubmed
    DOI
    Dale et al., 2014, Nucleic Acids Res. 42(14): 9158--9170
    metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.
    • Keywords:
    • insulators
  • Flybase
    Pubmed
    DOI
    Font-Burgada et al., 2014, Nucleic Acids Res. 42(4): 2126--2137
    chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome.
    • Keywords:
    • epigenetic markers
  • Flybase
    Pubmed
    DOI
    Vogelmann et al., 2014, PLoS Genet. 10(8): e1004544
    Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.
  • Flybase
    Pubmed
    DOI
    Zhou and Troyanskaya, 2014, PLoS Comput. Biol. 10(3): e1003525
    Global quantitative modeling of chromatin factor interactions.
    • Keywords:
    • chromatin
  • Flybase
    Pubmed
    DOI
    Seridi et al., 2014, PLoS ONE 9(10): e109326
    Dynamic Epigenetic Control of Highly Conserved Noncoding Elements.
    • Keywords:
    • noncoding elements
  • Flybase
    Pubmed
    DOI
    Chawla and Sokol, 2014, Nucleic Acids Res. 42(8): 5245--5255
    ADAR mediates differential expression of polycistronic microRNAs.
    • Keywords:
    • RNA editing
    • sRNAs
  • Flybase
    Pubmed
    DOI
    Maksimenko et al., 2014, Epigenetics 9(9): 1261--1270
    Highly conserved ENY2/Sus1 protein binds to Drosophila CTCF and is required for barrier activity.
    • Keywords:
    • insulators
  • Flybase
    Pubmed
    DOI
    Westholm et al., 2014, Cell Rep. 9(5): 1966--1980
    Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation.
    • Keywords:
    • circular RNAs
    • ecdysone
    • sRNAs
  • Flybase
    Pubmed
    DOI
    Webster et al., 2015, PLoS Biol. 13(7): e1002210
    The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster.
    • Keywords:
    • viruses
  • Flybase
    Pubmed
    DOI
    Duff et al., 2015, Nature 521(7552): 376--379
    Genome-wide identification of zero nucleotide recursive splicing in Drosophila.
    • Keywords:
    • splicing
  • Flybase
    Pubmed
    DOI
    Hadžić et al., 2015, Nucleic Acids Res. 43(4): 2199--2215
    Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED.
    • Keywords:
    • neurosecretion
  • Flybase
    Pubmed
    DOI
    Stampfel et al., 2015, Nature 528(7580): 147--151
    Transcriptional regulators form diverse groups with context-dependent regulatory functions.
    • Keywords:
    • transcription regulation
  • Pubmed
    Pérez-Lluch et al., 2015, Nat Genet. 47(10):1158-67.
    • Keywords:
    • chromatin
    • histone modifications
    • transcription regulation
  • Flybase
    Pubmed
    DOI
    Comoglio et al., 2015, Cell Rep. 11(5): 821--834
    High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins.
    • Keywords:
    • replication
  • Flybase
    Pubmed
    DOI
    Stoiber et al., 2016, G3 (Bethesda) 6(3): 683--694
    Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines.
    • Keywords:
    • ecdysone
    • transcriptome
  • Flybase
    Pubmed
    DOI
    Ulianov et al., 2016, Genome Res. 26(1): 70--84
    Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
    • Keywords:
    • bands and interbands
    • Hi-C
    • insulators
  • Flybase
    Pubmed
    DOI
    Swain et al., 2016, PLoS Genet. 12(9): e1006331
    Drosophila TDP-43 RNA-Binding Protein Facilitates Association of Sister Chromatid Cohesion Proteins with Genes, Enhancers and Polycomb Response Elements.
    • Keywords:
    • cohesin complex
    • RNA-binding proteins
  • Flybase
    Pubmed
    DOI
    Adrian et al., 2016, Genome Biol. Evol. 8(8): 2597--2612
    Predictive Models of Recombination Rate Variation across the Drosophila melanogaster Genome.
    • Keywords:
    • recombination
  • Flybase
    Pubmed
    DOI
    Huisinga et al., 2016, Genetics 202(2): 565--582
    Targeting of P-Element Reporters to Heterochromatic Domains by Transposable Element 1360 in Drosophila melanogaster.
    • Keywords:
    • heterochromatin
    • transposable elements
  • Flybase
    Pubmed
    DOI
    Rabinovich et al., 2016, Cell 164(1-2): 170--182
    Nitric Oxide as a Switching Mechanism between Axon Degeneration and Regrowth during Developmental Remodeling.
  • Flybase
    Bairoch, 2016, The Cellosaurus: a cell line knowledge resource.
    The Cellosaurus: a cell line knowledge resource.
  • Flybase
    Georgiev, 2016.4.25, Comments on S2 cell line used.
    Comments on S2 cell line used.
  • Flybase
    Pubmed
    DOI
    Thul et al., 2017, J. Cell Sci. 130(18): 3141--3157
    Targeting of the Drosophila protein CG2254/Ldsdh1 to a subset of lipid droplets.
    • Keywords:
    • lipid droplets
    • lipid trafficking
  • Flybase
    Pubmed
    DOI
    Daniele et al., 2017, Biol. Open 6(5): 540--550
    A novel proteolytic event controls Hedgehog intracellular sorting and distribution to receptive fields.
  • Flybase
    Pubmed
    DOI
    Misulovin et al., 2018, PLoS Genet. 14(2): e1007225
    Brca2, Pds5 and Wapl differentially control cohesin chromosome association and function.
  • Flybase
    Pubmed
    DOI
    Chen et al., 2018, Development 145(1): dev154047
    Shep regulates Drosophila neuronal remodeling by controlling transcription of its chromatin targets.
  • Flybase
    Pubmed
    DOI
    Yao et al., 2018, Mol. Cell 71(5): 848--857.e6
    Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons.
  • Flybase
    Pubmed
    DOI
    Baldi et al., 2018, Mol. Cell 72(4): 661--672.e4
    Genome-wide Rules of Nucleosome Phasing in Drosophila.
  • Flybase
    Pubmed
    DOI
    Baldi et al., 2018, Nat. Struct. Mol. Biol. 25(9): 894--901
    Genome-wide measurement of local nucleosome array regularity and spacing by nanopore sequencing.
  • Flybase
    Pubmed
    DOI
    Cusumano et al., 2018, PLoS Genet. 14(7): e1007500
    Modulation of miR-210 alters phasing of circadian locomotor activity and impairs projections of PDF clock neurons in Drosophila melanogaster.
  • Flybase
    Pubmed
    DOI
    Zhou et al., 2018, eLife 7: e38389
    Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development.
  • Flybase
    Pubmed
    DOI
    Cloud et al., 2019, eLife 8: e49677
    Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization.
  • Flybase
    Pubmed
    DOI
    Matsuo et al., 2019, J. Lipid Res. 60(7): 1199--1211
    Different mechanisms for selective transport of fatty acids using a single class of lipoprotein in Drosophila.
  • Flybase
    Pubmed
    DOI
    Pherson et al., 2019, Genome Res. 29(4): 602--612
    Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila.
  • Flybase
    Pubmed
    DOI
    Luzhin et al., 2019, J. Cell. Biochem. 120(3): 4494--4503
    Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
  • Flybase
    Pubmed
    DOI
    Luhur et al., 2019, J. Vis. Exp.: e59459
    Thawing, Culturing, and Cryopreserving Drosophila Cell Lines.
  • Flybase
    Pubmed
    DOI
    Yoong et al., 2020, Neuron 106(3): 452--467.e8
    Atypical Myosin Tunes Dendrite Arbor Subdivision.
  • Flybase
    Pubmed
    DOI
    Behrens et al., 2021, Mol. Cell 81(8): 1802--1815.e7
    High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq.
  • Flybase
    Pubmed
    DOI
    Bawankar et al., 2021, Nat. Commun. 12(1): 3778
    Hakai is required for stabilization of core components of the m6A mRNA methylation machinery.
  • Flybase
    Pubmed
    DOI
    Worpenberg et al., 2021, EMBO J. 40(4): e104975
    Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila.
  • Flybase
    Pubmed
    DOI
    Dib et al., 2021, Front. Genet. 12: 714152
    Pri smORF Peptides Are Wide Mediators of Ecdysone Signaling, Contributing to Shape Spatiotemporal Responses.
  • Flybase
    Pubmed
    DOI
    Han et al., 2021, Genetics 219(2): iyab113
    Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture.
  • Flybase
    Pubmed
    DOI
    Mariyappa et al., 2021, G3 (Bethesda) 11(8): jkab161
    Generation of Drosophila attP containing cell lines using CRISPR-Cas9.
  • Flybase
    Pubmed
    DOI
    Chen et al., 2021, Nat. Commun. 12(1): 6366
    Temporal inhibition of chromatin looping and enhancer accessibility during neuronal remodeling.
  • Flybase
    Pubmed
    DOI
    Shiomi et al., 2021, Cell Rep. 35(10): 109219
    Extreme deformability of insect cell membranes is governed by phospholipid scrambling.
  • Flybase
    Pubmed
    DOI
    Chathoth et al., 2022, Genome Res. 32(4): 682--698
    The role of insulators and transcription in 3D chromatin organization of flies.
  • Flybase
    Pubmed
    DOI
    Bar-Cohen et al., 2023, Development 150(11): dev201041
    Normal cell cycle progression requires negative regulation of E2F1 by Groucho during S phase and its relief at G2 phase.